Personnel

Leader

 

Ion Petre

E-mail: NOJUNK.ion.petre@abo.fi

Homepage: http://www.users.abo.fi/ipetre/

Position: Professor

Publications: View

Postdoctoral researchers

 

Vladimir Rogojin

E-mail: NOJUNK.vrogojin@abo.fi

Homepage: http://www.vrogojin.net

Position: Postdoctoral researcher

Publications: View

Research interests: My focus is at methodology development for bio-networks simulation and analysis as well as for large-scale multilevel and multidimenssional bio/med data integration; microarray data analysis; development of computational models for real-life bio-systems.

 

 

Eugen Czeizler

E-mail: NOJUNK.eugen.czeizler@abo.fi

Homepage: http://combio.abo.fi/personnel/eugenc/

Position: Postdoctoral researcher

Publications: View

Research interests: Network Science, Computational Modelling, Complex Systems, DNA Nanotechnology, Algorithms, Data Analytics

 

Sepinoud Azimi

E-mail: NOJUNK.sazimi@abo.fi

Homepage: http://research.it.abo.fi/personnel/sazimi

Position: Postdoctoral researcher

Publications: View

Research interests: Biomodelling, Computational Systems Biology, Computational genomics, Natural computing, Reaction Systems.

 

 

PhD students

 

 

 

Charmi Panchal

E-mail: NOJUNK.cpanchal@abo.fi

Homepage:Position: PhD student

Publications: View

Research interests: Biomodeling, Logic-based biological circuits, Boolean networks, Signalling pathway,  Gene expression dataset analysis,  Reaction systems, Qualitative modeling of biochemical system.

 

 

Muhammad Usman

E-mail: NOJUNK.msanwal@abo.fi

Homepage:Position: PhD student

Publications: View

Research interests:

 

Krishna Kanhaiya

E-mail: NOJUNK.kkanhaiy@abo.fi

Homepage:Position: PhD student

Publications: View

Research interests:

Undergraduate students:

 

 


Post doctoral research fellows Associate members

 

Mikhail Barash – University of Turku, Department of Mathematics and Statistics

E-mail:NOJUNK.mikhail.barash@utu.fi

Homepage: http://tucs.fi/education/phd/students/student.php?student=245

Position: TUCS Scientific Coordinator

Former members of the laboratory

 

  • Wu Kai Chiu, Ami (2015-2017): Network controllability
  • Diana-Elena Gratie (2011-2016): Computational systems biology.
  • Cristian Gratie (2013-2015): Quantitative model refinement.
  • Anne Seppänen (2013-2014), University of Turku. Currently at University of Turku, Finland.
  • Le Thi Thanh An (2013), University of Hanoi, NOJUNK.an.lethithanh@iwr.uni-heidelberg.de , Current homepage
  • Elena Czeizler (2008-2010): Computational systems biology.
  • Eugen Czeizler (2008-2010): Computational systems biology.
  • Tseren-Onolt Ishdorj (2007-2009): Gene assembly, membrane systems.
  • Artiom Alhazov (2007): Ciliate computing, membrane systems. Currently at the Academy of Sciences of Moldova, Current homepage.
PhD students

 

Undergraduate students
  • Tolou Shadbahr (2013 – 2015): Quantitative model refinement
  • Fatimah Shokri (2013 – 2015): Quantitative model refinement
  • Nebiat Ibssa (2014 – 2015), University of Turku: Implementation of Quantitative Reaction-based Model Refinement
  • Romina Paturca (2013-2014), Turku University of Applied Sciences.
  • Henrik Rönnholm (2008) Modeling protein phosphorylation and the heat shock response
  • Zoltan Bicskei (2007): Modeling and simulation tools for biocomputing
  • Henry Ogoe (2007): Computational modeling of cellular biological systems: the eukaryotic heat shock response as a case study
  • Sebastian Skogman (2007): Computer supported applications for gene assembly
  • Andreas Lavast (2006): Natural computing: genfusioner i ciliater coh dess komplexitet
  • Miika Langille (2006): Simple operations in gene assembly for ciliates – Prize for the best Master thesis in Computer Science in Finland in the academic year 2006-2007
  • Kristian Nylund (2006): A stochastic model and simulator for the heat shock response in eukaryotes and the reporter function of the green fluorescent protein
  • Andreas Pada (2006): A computational model for the heat shock response in eukaryotic cells
  • Vladimir Rogojin (2005): Membrane computing and ambient calculus
  • Peter Bäck (2004): Multimedia content description
  • Satu Jääskeläinen (2004): Accuracy of protein hydrophobicity predictions

Eugen Czeizler

Under Construction

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